BMicro
stable
Contents:
Getting started
Code reference
Development
Changelog
version ## 0.8.1 - 2023-02-07
version
version ### Fixed
version - Don’t reset calibration frequencies on dialog open #256
version
version ## 0.8.0 - 2022-11-22
version
version ### Added
version - Implement GUI to restrict peak width #251
version - Make options available in batch calibration #252
version
version ### Changed
version - Update to Qt version 6.3.2 #249
version
version ## 0.7.0 - 2022-09-28
version
version ### Added
version - Implement 4-peak fitting #244 https://github.com/BrillouinMicroscopy/bmlab/pull/167
version - Enable spectrum preview for 1D data #247
version
version ## 0.6.2 - 2022-09-27
version
version ### Added
version - Add console logging for dev packages #242
version
version ### Fixed
version - Show multi-peak fit in spectrum preview as one #245
version - Fix 3D plotting with matplotlib 3.6 #246
version
version ## 0.6.1 - 2022-09-16
version
version ### Fixed
version - Fix spectrum view #241
version
version ## 0.6.0 - 2022-09-16
version
version ### Added
version - Implement exporting 3D data https://github.com/BrillouinMicroscopy/bmlab/pull/162
version
version ### Changed
version - Fit Brillouin spectrum on frequency axis https://github.com/BrillouinMicroscopy/bmlab/pull/158
version - Bump bmlab to 0.6.1 #240
version
version ### Fixed
version - Fix setting axis limits for 1D data #238
version - Fix setting caxis in export dialog #235
version - Fix parameter label in csv files https://github.com/BrillouinMicroscopy/bmlab/pull/163
version
version ## 0.5.1 - 2022-09-02
version
version ### Fixed
version - Correctly initialize setup on new file load https://github.com/BrillouinMicroscopy/bmlab/pull/156
version - Show correct setup on file load #232
version
version ## 0.5.0 - 2022-09-02
version
version ### Added
version - Allow to account for calibration temperature #212
version - Allow to show image and spectrum #216 #218 #222 #224
version - Show fits in spectrum view #223 #225 #226
version - Implement multi-peak fit batch evaluation #217 #229
version - Export all peaks from multi-peak fits https://github.com/BrillouinMicroscopy/bmlab/pull/146
version - Write scale bar to Brillouin Tiff file https://github.com/BrillouinMicroscopy/bmlab/pull/154 https://github.com/BrillouinMicroscopy/bmlab/pull/155
version
version ### Changed
version - Allow to minimaximize the batch evaluation window #228
version - Bump bmlab to 0.5.0 #230
version
version ### Fixed
version - Don’t disable export button #219
version - Properly handle multi-peak fit bounds in evaluation view #220
version - Don’t fail batch evaluation for broken repetitions #221
version - Close current file before opening new file #227
version - Fix exporting fluorescence w/o scale calibration https://github.com/BrillouinMicroscopy/bmlab/pull/145
version
version ## 0.4.0 - 2022-08-17
version
version ### Added
version - Allow to configure Brillouin export #210
version
version ## 0.3.4 - 2022-08-12
version
version ### Fixed
version - Don’t crash if arc is empty #209
version - Fix github actions check pipeline #207
version
version ## 0.3.3 - 2022-07-01
version
version ### Fixed
version - Fix exporting on macOS and linux #206
version
version ## 0.3.2 - 2022-06-30
version
version ### Changed
version - Show BMicro version in about text as well #205
version
version ### Fixed
version - Don’t search whole Mac on empty folder name #204
version
version ## 0.3.1 - 2022-06-29
version
version ### Added
version - Add global exception handler #199
version
version ### Changed
version - Remove cron schedule from github actions workflows #202
version
version ### Fixed
version - Don’t crash on exporting #197 #201
version
version ## 0.3.0 - 2022-06-29
version
version ### Added
version - Implement batch evaluation #193
version - Add option to export data #189
version - Enable calibrating all calibrations at once #192
version
version ### Changed
version - Bump bmlab to version 0.2.1 #190
version - Show extraction points half transparent #191
version - Code cleanup #194
version
version ### Fixed
version - Fix race condition in case of slow evaluation #184
version - Update preview image on new file load #196
version
version ## 0.2.8 - 2022-05-13
version
version ### Fixed
version - Use correct bmlab version for macOS DMG packages #183
version
version ## 0.2.7 - 2022-05-12
version
version ### Added
version - Properly handle bmlab exceptions #180
version
version ### Fixed
version - Don’t crash when switching to multi-peak fit during evaluation #181 #182
version - Fix DMG packages for macOS by locking shapely version #179
version
version ## 0.2.6 - 2022-05-06
version
version ### Added
version - Implement two-peak Brillouin fitting #167 #168
version - Allow to toggle aspect ratio for 2D data #171
version
version ### Fixed
version - Check x-limits before setting to prevent warning #172
version
version ## 0.2.5 - 2022-04-25
version
version ### Added
version - Add calibration options dialog #162
version
version ### Changed
version - Show calibrations in correct temporal order #164
version - Show non-averged fit for each calibration image #165
version
version ### Fixed
version - Fix small layout glitch in extraction view #161
version
version ## 0.2.4 - 2022-04-12
version
version ### Added
version - Allow to manually set data range #159
version
version ### Changed
version - Make circle-fit half-transparent, show points on top #157
version
version ### Fixed
version - Fix opening broken/empty data sets #156
version - Fix automatic color scale for 2D data #158
version
version ## 0.2.3 - 2022-04-07
version
version ### Fixed
version - Fix showing 2D data #154
version
version ## 0.2.2 - 2022-03-22
version
version ### Changed
version - Code cleanup #145
version
version ### Fixed
version - Bring back multiprocessing support #149
version - Don’t open multiple instances on Win when evaluating #147
version - Don’t open multiple instances on MacOS with DMG package #140
version
version ## 0.2.1 - 2022-03-21
version
version ### Changed
version - Code cleanup #135 #142
version
version ### Fixed
version - Don’t crash when extracted peaks are on a straight line #141
version - Don’t crash when trying to evaluate #139
version
version ## 0.2.0 - 2022-03-15
version
version ### Added
version - Implement showing 3D data #128
version - Remember last used folder #132
version
version ### Fixed
version - Fix warning when file could not be opened #129
version - Fix build #131
version
version ## 0.1.6 - 2022-02-18
version
version ### Added
version - Add an about menu #119
version
version ### Changed
version - Update to PyQt6 to support M1 Macs #124
version
version ### Fixed
version - Request minimum required bmlab version #122
version - Pin Shapely to 1.8.0 #120 #121
version
version ## 0.1.5 - 2022-02-16
version
version ### Fixed
version - Adjust release pipeline to properly build and upload release artifacts #118 9347bce74f7bf1fb40ab823967f4be8490af47b9 eb5d7e7d2bcb4cf590e967a01a71d00aefced3b5
version
version ## 0.1.4 - 2022-02-16
version
version ### Added
version - Add keyboard shortcuts for file actions #117
version - Allow finding peaks in extraction view for all calibrations #111
version - Implement automatic peak finding in calibration view #110
version - Implement automatically finding peaks #99
version - Allow to browse through calibration spectra #89
version - Show selected extraction points in table, allow editing #85
version - Show colorbar with labels in evaluation view #70
version - Automatically load session if it exists #67
version
version ### Changed
version - Add action to exit app #107
version - Deploy with python-3.9 #105
version - Update pyinstaller version #104
version - Require python >= 3.7 #103
version - Add more package requirements #98
version - Suppress mean of empty slice warning #95
version - Suppress useless warning #88
version - Automatically set image shape on orientation change #84
version - Adjust to streamlined bmlab interface #83
version - Adjust to changes in bmlab #82
version - Refactor use of session #81
version - Only check bmlab main branch in workflows #72
version
version ### Fixed
version - Fix rotation labels and make rotations more generic #114
version - Fix matplotlib deprecation warnings #115
version - Fix build on appveyor and for MacOS #116
version - Correctly show evaluation plot after closing a file #102
version - Fix crash when clicking if no file is loaded #101
version - Try to fix slow evaluation plot update #97
version - Recalculate derived values when calibration changes #90
version - Correctly scale the data if the unit is GHz #77
version - Only update necessary tab when switching tabs #76
version - Show measurement of arbitrary dimensionality correctly #74
version - Actually run pytest in checks #73
version
version ## 0.1.3
version
version - setup: use “pytest” command instead of deprecated “setup.py test”
version - ui: add app icon (#9)
version - ui: data tab (#11)
version - build: add Windows and macOS build pipeline (#1)
version
version ## 0.1.2
version
version - CI automation
version
version ## 0.1.1
version
version - Test CI automation
version
version ## 0.1.0
version
version - dummy release
Bilbliography
BMicro
»
Changelog
Edit on GitHub
Changelog
List of changes in-between bmlab releases.
version ## 0.8.1 - 2023-02-07
version
version ### Fixed
version - Don’t reset calibration frequencies on dialog open #256
version
version ## 0.8.0 - 2022-11-22
version
version ### Added
version - Implement GUI to restrict peak width #251
version - Make options available in batch calibration #252
version
version ### Changed
version - Update to Qt version 6.3.2 #249
version
version ## 0.7.0 - 2022-09-28
version
version ### Added
version - Implement 4-peak fitting #244
https://github.com/BrillouinMicroscopy/bmlab/pull/167
version - Enable spectrum preview for 1D data #247
version
version ## 0.6.2 - 2022-09-27
version
version ### Added
version - Add console logging for dev packages #242
version
version ### Fixed
version - Show multi-peak fit in spectrum preview as one #245
version - Fix 3D plotting with matplotlib 3.6 #246
version
version ## 0.6.1 - 2022-09-16
version
version ### Fixed
version - Fix spectrum view #241
version
version ## 0.6.0 - 2022-09-16
version
version ### Added
version - Implement exporting 3D data
https://github.com/BrillouinMicroscopy/bmlab/pull/162
version
version ### Changed
version - Fit Brillouin spectrum on frequency axis
https://github.com/BrillouinMicroscopy/bmlab/pull/158
version - Bump bmlab to 0.6.1 #240
version
version ### Fixed
version - Fix setting axis limits for 1D data #238
version - Fix setting caxis in export dialog #235
version - Fix parameter label in csv files
https://github.com/BrillouinMicroscopy/bmlab/pull/163
version
version ## 0.5.1 - 2022-09-02
version
version ### Fixed
version - Correctly initialize setup on new file load
https://github.com/BrillouinMicroscopy/bmlab/pull/156
version - Show correct setup on file load #232
version
version ## 0.5.0 - 2022-09-02
version
version ### Added
version - Allow to account for calibration temperature #212
version - Allow to show image and spectrum #216 #218 #222 #224
version - Show fits in spectrum view #223 #225 #226
version - Implement multi-peak fit batch evaluation #217 #229
version - Export all peaks from multi-peak fits
https://github.com/BrillouinMicroscopy/bmlab/pull/146
version - Write scale bar to Brillouin Tiff file
https://github.com/BrillouinMicroscopy/bmlab/pull/154
https://github.com/BrillouinMicroscopy/bmlab/pull/155
version
version ### Changed
version - Allow to minimaximize the batch evaluation window #228
version - Bump bmlab to 0.5.0 #230
version
version ### Fixed
version - Don’t disable export button #219
version - Properly handle multi-peak fit bounds in evaluation view #220
version - Don’t fail batch evaluation for broken repetitions #221
version - Close current file before opening new file #227
version - Fix exporting fluorescence w/o scale calibration
https://github.com/BrillouinMicroscopy/bmlab/pull/145
version
version ## 0.4.0 - 2022-08-17
version
version ### Added
version - Allow to configure Brillouin export #210
version
version ## 0.3.4 - 2022-08-12
version
version ### Fixed
version - Don’t crash if arc is empty #209
version - Fix github actions check pipeline #207
version
version ## 0.3.3 - 2022-07-01
version
version ### Fixed
version - Fix exporting on macOS and linux #206
version
version ## 0.3.2 - 2022-06-30
version
version ### Changed
version - Show BMicro version in about text as well #205
version
version ### Fixed
version - Don’t search whole Mac on empty folder name #204
version
version ## 0.3.1 - 2022-06-29
version
version ### Added
version - Add global exception handler #199
version
version ### Changed
version - Remove cron schedule from github actions workflows #202
version
version ### Fixed
version - Don’t crash on exporting #197 #201
version
version ## 0.3.0 - 2022-06-29
version
version ### Added
version - Implement batch evaluation #193
version - Add option to export data #189
version - Enable calibrating all calibrations at once #192
version
version ### Changed
version - Bump bmlab to version 0.2.1 #190
version - Show extraction points half transparent #191
version - Code cleanup #194
version
version ### Fixed
version - Fix race condition in case of slow evaluation #184
version - Update preview image on new file load #196
version
version ## 0.2.8 - 2022-05-13
version
version ### Fixed
version - Use correct bmlab version for macOS DMG packages #183
version
version ## 0.2.7 - 2022-05-12
version
version ### Added
version - Properly handle bmlab exceptions #180
version
version ### Fixed
version - Don’t crash when switching to multi-peak fit during evaluation #181 #182
version - Fix DMG packages for macOS by locking shapely version #179
version
version ## 0.2.6 - 2022-05-06
version
version ### Added
version - Implement two-peak Brillouin fitting #167 #168
version - Allow to toggle aspect ratio for 2D data #171
version
version ### Fixed
version - Check x-limits before setting to prevent warning #172
version
version ## 0.2.5 - 2022-04-25
version
version ### Added
version - Add calibration options dialog #162
version
version ### Changed
version - Show calibrations in correct temporal order #164
version - Show non-averged fit for each calibration image #165
version
version ### Fixed
version - Fix small layout glitch in extraction view #161
version
version ## 0.2.4 - 2022-04-12
version
version ### Added
version - Allow to manually set data range #159
version
version ### Changed
version - Make circle-fit half-transparent, show points on top #157
version
version ### Fixed
version - Fix opening broken/empty data sets #156
version - Fix automatic color scale for 2D data #158
version
version ## 0.2.3 - 2022-04-07
version
version ### Fixed
version - Fix showing 2D data #154
version
version ## 0.2.2 - 2022-03-22
version
version ### Changed
version - Code cleanup #145
version
version ### Fixed
version - Bring back multiprocessing support #149
version - Don’t open multiple instances on Win when evaluating #147
version - Don’t open multiple instances on MacOS with DMG package #140
version
version ## 0.2.1 - 2022-03-21
version
version ### Changed
version - Code cleanup #135 #142
version
version ### Fixed
version - Don’t crash when extracted peaks are on a straight line #141
version - Don’t crash when trying to evaluate #139
version
version ## 0.2.0 - 2022-03-15
version
version ### Added
version - Implement showing 3D data #128
version - Remember last used folder #132
version
version ### Fixed
version - Fix warning when file could not be opened #129
version - Fix build #131
version
version ## 0.1.6 - 2022-02-18
version
version ### Added
version - Add an about menu #119
version
version ### Changed
version - Update to PyQt6 to support M1 Macs #124
version
version ### Fixed
version - Request minimum required bmlab version #122
version - Pin Shapely to 1.8.0 #120 #121
version
version ## 0.1.5 - 2022-02-16
version
version ### Fixed
version - Adjust release pipeline to properly build and upload release artifacts #118 9347bce74f7bf1fb40ab823967f4be8490af47b9 eb5d7e7d2bcb4cf590e967a01a71d00aefced3b5
version
version ## 0.1.4 - 2022-02-16
version
version ### Added
version - Add keyboard shortcuts for file actions #117
version - Allow finding peaks in extraction view for all calibrations #111
version - Implement automatic peak finding in calibration view #110
version - Implement automatically finding peaks #99
version - Allow to browse through calibration spectra #89
version - Show selected extraction points in table, allow editing #85
version - Show colorbar with labels in evaluation view #70
version - Automatically load session if it exists #67
version
version ### Changed
version - Add action to exit app #107
version - Deploy with python-3.9 #105
version - Update pyinstaller version #104
version - Require python >= 3.7 #103
version - Add more package requirements #98
version - Suppress mean of empty slice warning #95
version - Suppress useless warning #88
version - Automatically set image shape on orientation change #84
version - Adjust to streamlined bmlab interface #83
version - Adjust to changes in bmlab #82
version - Refactor use of session #81
version - Only check bmlab main branch in workflows #72
version
version ### Fixed
version - Fix rotation labels and make rotations more generic #114
version - Fix matplotlib deprecation warnings #115
version - Fix build on appveyor and for MacOS #116
version - Correctly show evaluation plot after closing a file #102
version - Fix crash when clicking if no file is loaded #101
version - Try to fix slow evaluation plot update #97
version - Recalculate derived values when calibration changes #90
version - Correctly scale the data if the unit is GHz #77
version - Only update necessary tab when switching tabs #76
version - Show measurement of arbitrary dimensionality correctly #74
version - Actually run pytest in checks #73
version
version ## 0.1.3
version
version - setup: use “pytest” command instead of deprecated “setup.py test”
version - ui: add app icon (#9)
version - ui: data tab (#11)
version - build: add Windows and macOS build pipeline (#1)
version
version ## 0.1.2
version
version - CI automation
version
version ## 0.1.1
version
version - Test CI automation
version
version ## 0.1.0
version
version - dummy release
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v: stable
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0.8.1
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